Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0037
(740 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42080| Best HMM Match : DUF947 (HMM E-Value=3.2) 30 1.7
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_27880| Best HMM Match : Activin_recp (HMM E-Value=5.1) 29 5.2
SB_8621| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_54860| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_10048| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 28 9.1
SB_18161| Best HMM Match : Fz (HMM E-Value=4e-05) 28 9.1
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_1771| Best HMM Match : Fz (HMM E-Value=0.00021) 28 9.1
>SB_42080| Best HMM Match : DUF947 (HMM E-Value=3.2)
Length = 274
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = -3
Query: 729 YIPIYIRETYIHADIHTRDIHTYRYT*RYKQSFLVENSKDIKQDKPETI*IYNNLANPSL 550
++ + +R+TY TR++++ +K L++ K+ +QD +T +Y+N NP+
Sbjct: 200 HLLLKVRKTYQQDIRDTREVNS-----NFKVHLLLKVRKNDQQDIRDTREVYSNFTNPTD 254
Query: 549 RPEGKH--HLNRFYEMCGFF 496
R + H N +E FF
Sbjct: 255 RGKWLHISDFNEKHESARFF 274
>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Frame = +1
Query: 529 MMFTFRSQRWVSQIIVY--SDCLRFVLFDVFAILYEETLLISLCIP----VCMYVSRMYI 690
+M+T + R+V + V + C+R V+ V+A Y ++ +SLC V V +
Sbjct: 346 VMYTVYACRYVHSVCVSLCAQCMRVVMCTVYACRYVHSVCVSLCAQCVRVVMCTVCACRL 405
Query: 691 GMYVCLS 711
G VC+S
Sbjct: 406 GHSVCVS 412
Score = 29.9 bits (64), Expect = 2.3
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Frame = +1
Query: 529 MMFTFRSQRWVSQIIVY--SDCLRFVLFDVFAILYEETLLISLC------IPVCMYVSRM 684
+M T + R+V + V + C+R V+ V A Y ++ +SLC + + +Y M
Sbjct: 288 VMCTVCASRYVHSVCVSLCTQCMRVVMCTVCACRYIHSVCVSLCAQSVRVVKITVYAVVM 347
Query: 685 YIGMYVCLSYVYRYVCMS 738
Y +Y C YV+ VC+S
Sbjct: 348 YT-VYAC-RYVHS-VCVS 362
>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2982
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Frame = -2
Query: 181 SPGGTAADHLRAEPVPGDQQSGPQPTAL---LDSYLQNP 74
SPG A DH P P PT++ +D Y Q P
Sbjct: 1531 SPGPPATDHTHQPPAPSHMDDHTHPTSVPSHMDGYTQTP 1569
>SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Frame = -2
Query: 181 SPGGTAADHLRAEPVPGDQQSGPQPTAL---LDSYLQNP 74
SPG A DH P P PT++ +D Y Q P
Sbjct: 203 SPGPPATDHTHQPPAPSHMDDHTHPTSVPSHMDGYTQTP 241
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 638 CLYRYVYRYVCMSLVCISACMYVSRMYIGMYVC 736
CL+ VY V L C+SAC+++S + + +VC
Sbjct: 1304 CLFACVYPSVSRVLTCLSACVHLS-VRVCSHVC 1335
>SB_27880| Best HMM Match : Activin_recp (HMM E-Value=5.1)
Length = 415
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 738 RHTYIPIYIRETYIHADIHTRDIHT 664
+H Y +Y T++H +HT++I T
Sbjct: 73 KHAYKCLYTPRTFLHVSVHTKNIPT 97
Score = 27.9 bits (59), Expect = 9.1
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -3
Query: 738 RHTYIPIYIRETYIHADIHTRDIHT 664
+H+Y +Y T++H ++T++I T
Sbjct: 321 KHSYTGLYTPRTFLHVSVYTKNIPT 345
>SB_8621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = -2
Query: 307 GRGRAAVSGDARPMYTVHAPTACGWCASRHSPARCRGATNSASPGGTAADHLRAEPVPGD 128
G R + G P +A + GW R + + + A+ GGT+ADH R + G
Sbjct: 10 GERRTGIRGT--PRVIPNASVSTGWTTVRVTTSGMSDSCALAAIGGTSADHARV-TLFGF 66
Query: 127 QQSGPQ 110
++ PQ
Sbjct: 67 ERHAPQ 72
>SB_54860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 326 CSCRICXXXXXXXXXXXSAHVHGPRADRVRLVCEQTQ 216
C+CR+ +VHGP A V VC +TQ
Sbjct: 33 CACRVISMGTDPLRMSRHEYVHGPIAHVVSSVCARTQ 69
>SB_10048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 138 TGSARRWSAAVPPGLAEF--VAPLQRAGLCLLA 230
TGS +R +PP +A F V+PL A CLLA
Sbjct: 159 TGSIQRQLNLLPPAIASFLAVSPLGTAQKCLLA 191
>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2408
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 687 IHTRDIHTYRYT*RYKQSFLVENSKDIKQDKP 592
+H D T+R R++++FLV N + I +D+P
Sbjct: 1360 VHAADALTFRE--RFQKNFLVPNEEKISEDEP 1389
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/59 (20%), Positives = 31/59 (52%)
Frame = +1
Query: 556 WVSQIIVYSDCLRFVLFDVFAILYEETLLISLCIPVCMYVSRMYIGMYVCLSYVYRYVC 732
++ +I+ Y + L + L + T+ +S C + +Y++R+++G+Y ++C
Sbjct: 1622 YICRIVSYLCRIVMSLSECTVSLSDCTVPLSACTVLLLYLNRIFVGLYRTFVIFEPFIC 1680
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/61 (31%), Positives = 24/61 (39%)
Frame = -2
Query: 280 DARPMYTVHAPTACGWCASRHSPARCRGATNSASPGGTAADHLRAEPVPGDQQSGPQPTA 101
DAR V A + S H + T + SPGG R + P D Q QP+
Sbjct: 385 DARMRCDVSAVSGSLSSVSGHPQSNRESLTPAVSPGGEREPRARVKSAPSDSQH-KQPSI 443
Query: 100 L 98
L
Sbjct: 444 L 444
>SB_18161| Best HMM Match : Fz (HMM E-Value=4e-05)
Length = 163
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 546 PEGKHHLNRFYEMCGF 499
PEGKH+L R YE GF
Sbjct: 140 PEGKHYLERCYEPNGF 155
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 601 LFDVFAILYEETLLISLCIPVCMYVSRMYIGMYVCL 708
L DV + +++E LL+ LC V ++ S + VC+
Sbjct: 238 LLDVHSKMHKEALLVFLCCAVSVWASENTSSVVVCV 273
>SB_1771| Best HMM Match : Fz (HMM E-Value=0.00021)
Length = 163
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 546 PEGKHHLNRFYEMCGF 499
PEGKH+L R YE GF
Sbjct: 140 PEGKHYLERCYEPNGF 155
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,460,150
Number of Sequences: 59808
Number of extensions: 474543
Number of successful extensions: 1605
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1598
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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