Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0035
(754 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 38 0.011
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 34 0.18
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 33 0.32
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 33 0.32
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 33 0.32
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 33 0.32
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 29 9.0
AE014134-2150|AAF53159.2| 270|Drosophila melanogaster CG14947-P... 29 9.0
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 38.3 bits (85), Expect = 0.011
Identities = 51/229 (22%), Positives = 87/229 (37%), Gaps = 21/229 (9%)
Frame = -3
Query: 635 KVISLFDQHAPVRRVRIKHKP-APWLTPDIKTLMXXXXXXXXXXXRCPTEHSLAIYKALR 459
KVI ++ + R+ HK PW +++ L + +L YK
Sbjct: 267 KVIRSAANYSIPQTKRVIHKAKVPWWNANLQQLRDQKQRLFSSYKANTNDTNLIRYKKAN 326
Query: 458 NRCNRLCRDAKRLYFHKSLENRSPAHT----WRFLKSV-GIGKTPVSSVKD-----TDLC 309
+ AKR K SP + W +K + GI TP +K T
Sbjct: 327 ALFKKAVLSAKRNSLEKFTSKISPVSSTKKVWSDIKRLAGIPPTPFKYIKSNSGTLTGSF 386
Query: 308 ALNKHFSLPPVSLS-DSSKTATLLKISS-LSVPRIPIFELSPVSVA--------DVRNSF 159
+ + F+L S D + +A +++ + + I LSP + + ++ NS
Sbjct: 387 DIAEEFALSWSKYSSDQNFSAEYIRVKNRYLLEPYAIDSLSPSATSLDSNFTLLEIENSV 446
Query: 158 FSISSTAVGIDNVCSKMIALILPTVAPILTDIFNFSFTSSNFPDSWKPA 12
+ G D V M+ + P + L DIFN T+ +P +W+ A
Sbjct: 447 AKAKGKSPGADRVSYPMLKNLSPHLKTKLLDIFNQILTTGKYPHTWRSA 495
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 34.3 bits (75), Expect = 0.18
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = -3
Query: 236 ISSLSVPRIPIFELSPVSVADVRNSFFSIS-STAVGIDNVCSKMIALILPTVAPILTDIF 60
+ SL P + P+ V ++ + S+ + GIDNVC+ + + L I+
Sbjct: 421 LDSLETPLQMSLPIKPIRVEEIVEAIKSLPLKKSPGIDNVCNATLKALPVRAILYLALIY 480
Query: 59 NFSFTSSNFPDSWKPAA 9
N FP WK AA
Sbjct: 481 NAILRVQFFPKQWKMAA 497
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 33.5 bits (73), Expect = 0.32
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = -3
Query: 191 PVSVADVRNSFFSIS-STAVGIDNVCSKMIALILPTVAPI-LTDIFNFSFTSSNFPDSWK 18
PV++A++ S+ A G DN+ +K I + LPT A I L I+N + +FP+ WK
Sbjct: 36 PVTLAELNGLINSLELKKAPGTDNLNNKTI-INLPTKARIYLILIYNNILRTGHFPNKWK 94
Query: 17 PAA 9
A+
Sbjct: 95 HAS 97
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 33.5 bits (73), Expect = 0.32
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = -3
Query: 191 PVSVADVRNSFFSIS-STAVGIDNVCSKMIALILPTVAPI-LTDIFNFSFTSSNFPDSWK 18
PV++A++ S+ A G DN+ +K I + LPT A I L I+N + +FP+ WK
Sbjct: 483 PVTLAELNGLINSLELKKAPGTDNLNNKTI-INLPTKARIYLILIYNNILRTGHFPNKWK 541
Query: 17 PAA 9
A+
Sbjct: 542 HAS 544
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 33.5 bits (73), Expect = 0.32
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = -3
Query: 191 PVSVADVRNSFFSIS-STAVGIDNVCSKMIALILPTVAPI-LTDIFNFSFTSSNFPDSWK 18
PV++A++ S+ A G DN+ +K I + LPT A I L I+N + +FP+ WK
Sbjct: 483 PVTLAELNGLINSLELKKAPGTDNLNNKTI-INLPTKARIYLILIYNNILRTGHFPNKWK 541
Query: 17 PAA 9
A+
Sbjct: 542 HAS 544
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 33.5 bits (73), Expect = 0.32
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = -3
Query: 191 PVSVADVRNSFFSIS-STAVGIDNVCSKMIALILPTVAPI-LTDIFNFSFTSSNFPDSWK 18
PV++A++ S+ A G DN+ +K I + LPT A I L I+N + +FP+ WK
Sbjct: 483 PVTLAELNGLINSLELKKAPGTDNLNNKTI-INLPTKARIYLILIYNNILRTGHFPNKWK 541
Query: 17 PAA 9
A+
Sbjct: 542 HAS 544
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 28.7 bits (61), Expect = 9.0
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 197 LSPVSVADVRNSFFSIS-STAVGIDNVCSKMIALILPTVAPILTDIFNFSFTSSNFPDSW 21
LS V++ +V+N + A G D + ++ I L+ L IFN FP +W
Sbjct: 435 LSAVTLEEVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLALIFNSVLDVGYFPKAW 494
Query: 20 KPAA 9
K A+
Sbjct: 495 KSAS 498
>AE014134-2150|AAF53159.2| 270|Drosophila melanogaster CG14947-PA
protein.
Length = 270
Score = 28.7 bits (61), Expect = 9.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 326 KDTDLCALNKHFSLPPVSLSDSSKTATLLKIS 231
K +D+C LN HF L ++L D S + KIS
Sbjct: 79 KVSDVCLLNDHFILVKMALPDPSPPPSKSKIS 110
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,744,406
Number of Sequences: 53049
Number of extensions: 706207
Number of successful extensions: 1873
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1869
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3437745267
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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