Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0034
(840 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17) 35 0.071
SB_22648| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_26106| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.53) 31 1.2
SB_48894| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96) 29 4.7
SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0) 29 4.7
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_1010| Best HMM Match : Spt4 (HMM E-Value=6.9) 29 6.2
SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32) 28 8.2
SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0) 28 8.2
SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_27684| Best HMM Match : DUF1660 (HMM E-Value=3.8) 28 8.2
>SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)
Length = 1086
Score = 35.1 bits (77), Expect = 0.071
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = -2
Query: 581 PCRSRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANIT 459
P S T+CG AT+T+S I+ A+++ +T +SS N+T
Sbjct: 730 PTVSTTTCGAAATKTTSAISQGASTSLQATTHSVSSPTNVT 770
>SB_22648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 34.3 bits (75), Expect = 0.12
Identities = 27/74 (36%), Positives = 36/74 (48%)
Frame = -2
Query: 554 TRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETEKTTPAT 375
T +T TS+ TS S + ST S++ + T +N T STTT+ T TT T
Sbjct: 16 TTSTTTSTTNTSTTTSTTTSTTN-TSTTTSTTTSTTNTSTT-TSTTTS-TTNTSTTTSTT 72
Query: 374 MSAGNSSLFGKTTT 333
S N+S TTT
Sbjct: 73 TSTTNTSTTTSTTT 86
>SB_26106| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.53)
Length = 291
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = -2
Query: 572 SRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWML 435
S+T GT T+ T++ ++ Y+T + +++ + T+K +NW+L
Sbjct: 241 SKTQHGTTQHSTTQHSTTQYSTTQYNTTQHVTTRSASTVKHNNWLL 286
>SB_48894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 293 KYISYSVFSILNITLLSSQREMSCQLTWWLV*SFPSP 403
+YI + + ++ +S + CQ+ WWL +PSP
Sbjct: 36 QYIGLQLLASSGVSSRASDIHIGCQIVWWLDDRYPSP 72
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 29.5 bits (63), Expect = 3.6
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Frame = -3
Query: 334 RDIQDTEHRIRDVL-ETGRERGQLRRQEDLGIEWFQ*EETHLVFIPGKGGRPTAVPHR-E 161
RD QD ++ + E+G+ + R L IE+ Q +E+ G GG P P R
Sbjct: 25 RDEQDAADAMKQMGGESGKGKEIFGRA--LNIEYAQEKESSAPRRGGYGGGPPRGPPRGH 82
Query: 160 P----GVPAGTEAGRERGLIRGPPCVGEQR 83
P G P G RG RGPP G R
Sbjct: 83 PMRGRGAPYGRGGPPSRGPPRGPPLPGPPR 112
>SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)
Length = 725
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = -2
Query: 569 RTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETEK 390
R+ G+RA+R + T R + ++ + N L S+ +++ + S+ LAST + PG +
Sbjct: 269 RSRPGSRASRVTPLSTPRLSRHTRAHNLPLGSNFSLSRRASHGPSPLASTVLSLPGTQDY 328
Query: 389 TT 384
T
Sbjct: 329 LT 330
>SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 689
Score = 29.1 bits (62), Expect = 4.7
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = -2
Query: 536 SSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETEKTTPATMSAGNS 357
+S S +NSNS S + S+S + + SN +T A+TTT T T AT +A +
Sbjct: 391 NSNSNSNSNSNSNSNSNSNSNSNSNSNSNSNSTVT-ATTTTTVTVTTTATATATATATAT 449
Query: 356 SLFGKTTT 333
+ TTT
Sbjct: 450 ATATVTTT 457
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 28.7 bits (61), Expect = 6.2
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = -2
Query: 563 SCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*P-GETEKT 387
S G+ +S+ T +S ST + N + T S TT P G T T
Sbjct: 138 SSGSTLPTSSTPATQNPTDSSLSTKPPTKKTGETQSPTENSISTEESATTPTPSGSTSPT 197
Query: 386 TPATMSAGNSSLFGKTT 336
+P S +S+ G+TT
Sbjct: 198 SPNNASPQSSTRPGETT 214
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 190 GRPTAVPHREPGVPAGTEAGRERGLIRGPP 101
G+PTA + PG P G G G++ P
Sbjct: 495 GKPTAPTPKPPGSPVGVTQGPTEGVVSAKP 524
>SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 868
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 63 RGCRRLSRCSPTQGGPRMSPRSRPASVPAGTPGSR*GTAVGLPP 194
R + S P+ G P PR RP P PG+R G + P
Sbjct: 163 RNLHKASGGGPSLGAPGGRPRIRPEIRPGARPGARPGARPRVRP 206
>SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.7 bits (61), Expect = 6.2
Identities = 22/58 (37%), Positives = 26/58 (44%)
Frame = +3
Query: 30 TATAGL*SRSTRGCRRLSRCSPTQGGPRMSPRSRPASVPAGTPGSR*GTAVGLPPLPG 203
T++A L R +G R R P GP P R P G PG T +GLP PG
Sbjct: 459 TSSATLGGRGPQGVRG-DRGPPGPAGPP-GPSGRYVPGPPGPPGR---TVIGLPGPPG 511
>SB_1010| Best HMM Match : Spt4 (HMM E-Value=6.9)
Length = 99
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 291 KLDVNVDSYGDRKTWGSNGSSEKRHTWSLYPVKVGDQQ 178
K+ +N S+ +TW N KR +YP++ G +Q
Sbjct: 31 KVKLNPGSWACEETWQKNSKDIKRAIKGIYPMEEGPKQ 68
>SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/73 (23%), Positives = 44/73 (60%)
Frame = -2
Query: 572 SRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETE 393
S +S + ++ +SS +S ++S+S S++ SSS++ + S+ + +S++++ +
Sbjct: 94 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 153
Query: 392 KTTPATMSAGNSS 354
++ ++ S+ NSS
Sbjct: 154 SSSSSSSSSSNSS 166
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/73 (23%), Positives = 44/73 (60%)
Frame = -2
Query: 572 SRTSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETE 393
S +S + ++ +SS +S ++SNS S++ SSS++ + S+ + +S++++ +
Sbjct: 142 SSSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 201
Query: 392 KTTPATMSAGNSS 354
++ ++ S+ +SS
Sbjct: 202 SSSSSSSSSSSSS 214
>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
Length = 1074
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 108 PRMSPRSRPASVPAGTPGSR*GTAVG-LPP-LPGI 206
P P RP +P TPG R G G +PP +PG+
Sbjct: 509 PGRRPGWRPGGIPGRTPGRRPGGRPGNIPPFVPGL 543
>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
Length = 695
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 84 RCSPTQGGPRMSPRSRPASVPAGTPGS 164
R SP + PR SPRS P + P G+P S
Sbjct: 341 RPSP-KNSPRTSPRSSPFASPTGSPTS 366
>SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = -2
Query: 566 TSCGTRATRTSSKITSRANSNSYSTNR*LSSSANITIKLSNWMLTLASTTTA*PGETEKT 387
TS + + SS +S +NSNS S++ SSS++ + SN S +++ + +
Sbjct: 116 TSSSSSNSSRSSSSSSNSNSNSSSSSSSSSSSSSGSSSSSNSNSNSNSNSSSSSNSSSNS 175
Query: 386 TPATMSAGNSS 354
+ S+ NSS
Sbjct: 176 NSNSSSSSNSS 186
>SB_27684| Best HMM Match : DUF1660 (HMM E-Value=3.8)
Length = 398
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = -3
Query: 187 RPTAVPHREPGVPAGTEAGRERGLIRGPPCVGEQRDSRRQPRVLRLHN 44
RP HR GV E E G G P G D++R P V R H+
Sbjct: 99 RPLPRKHRHEGVSGDRENTEEDGGANGSPRGG--GDTKRPPYVTRRHS 144
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,938,526
Number of Sequences: 59808
Number of extensions: 523775
Number of successful extensions: 1757
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1746
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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