Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0024
(892 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin pr... 112 4e-27
AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin pr... 112 4e-27
AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin pr... 100 1e-23
AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin pr... 98 7e-23
AM292344-1|CAL23156.1| 291|Tribolium castaneum gustatory recept... 24 1.8
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 23 4.3
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 23 4.3
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 23 4.3
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 23 4.3
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 23 4.3
AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain tran... 23 4.3
EF592538-1|ABQ95984.1| 582|Tribolium castaneum beta-N-acetylglu... 22 7.4
EF222296-1|ABN79656.2| 403|Tribolium castaneum arginine vasopre... 21 9.8
AM292369-1|CAL23181.1| 408|Tribolium castaneum gustatory recept... 21 9.8
>AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin
protein.
Length = 76
Score = 112 bits (269), Expect = 4e-27
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin
protein.
Length = 685
Score = 112 bits (269), Expect = 4e-27
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 112 bits (269), Expect = 4e-27
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 93 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 112 bits (269), Expect = 4e-27
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 169 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 112 bits (269), Expect = 4e-27
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 245 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 112 bits (269), Expect = 4e-27
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 321 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 112 bits (269), Expect = 4e-27
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 473 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 526
Score = 112 bits (269), Expect = 4e-27
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 549 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 602
Score = 112 bits (269), Expect = 4e-27
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 625 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 678
Score = 109 bits (263), Expect = 2e-26
Identities = 52/54 (96%), Positives = 53/54 (98%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
VEPSDTIENVKAKIQDKEGIPP+QQR IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 397 VEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYNIQKESTLHLV 450
>AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin
protein.
Length = 64
Score = 100 bits (240), Expect = 1e-23
Identities = 47/48 (97%), Positives = 48/48 (100%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKE 748
VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKE
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
>AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin
protein.
Length = 112
Score = 98.3 bits (234), Expect = 7e-23
Identities = 46/48 (95%), Positives = 47/48 (97%)
Frame = -2
Query: 891 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKE 748
VEPSDTIENVKAKIQDKEGIPP+QQR IFAGKQLEDGRTLSDYNIQKE
Sbjct: 65 VEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYNIQKE 112
Score = 88.6 bits (210), Expect = 6e-20
Identities = 41/42 (97%), Positives = 42/42 (100%)
Frame = -2
Query: 855 KIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 730
KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 1 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 42
>AM292344-1|CAL23156.1| 291|Tribolium castaneum gustatory receptor
candidate 23 protein.
Length = 291
Score = 23.8 bits (49), Expect = 1.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 566 CSPVHSRRRRWILPFSSTL*NLRTASLTFFFLCLIF 673
C P S R + + FS+T L A +TF + L F
Sbjct: 253 CRPTFSAARFYGIDFSNTFLGLVGAVVTFLIVLLQF 288
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 22.6 bits (46), Expect = 4.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 457 LEGTYLFVVVFEDHRAMTLPAVVTVLHHR 543
L GTY ++F ++ L VV HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 22.6 bits (46), Expect = 4.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 457 LEGTYLFVVVFEDHRAMTLPAVVTVLHHR 543
L GTY ++F ++ L VV HHR
Sbjct: 273 LIGTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 22.6 bits (46), Expect = 4.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 457 LEGTYLFVVVFEDHRAMTLPAVVTVLHHR 543
L GTY ++F ++ L VV HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 22.6 bits (46), Expect = 4.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 457 LEGTYLFVVVFEDHRAMTLPAVVTVLHHR 543
L GTY ++F ++ L VV HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 22.6 bits (46), Expect = 4.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 457 LEGTYLFVVVFEDHRAMTLPAVVTVLHHR 543
L GTY ++F ++ L VV HHR
Sbjct: 273 LIGTYFNCIMFMVASSVVLTVVVLNYHHR 301
>AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain
transcription factor Prothoraxlessprotein.
Length = 323
Score = 22.6 bits (46), Expect = 4.3
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = +3
Query: 714 HHEASTPGGGWIPSGYCSPR 773
HH P GG P G PR
Sbjct: 63 HHYGGPPSGGQPPQGMPYPR 82
>EF592538-1|ABQ95984.1| 582|Tribolium castaneum
beta-N-acetylglucosaminidase NAG3 protein.
Length = 582
Score = 21.8 bits (44), Expect = 7.4
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = -3
Query: 125 EFTHLGVNTTRLSCW 81
E HLG + L+CW
Sbjct: 364 ELFHLGSDEVNLTCW 378
>EF222296-1|ABN79656.2| 403|Tribolium castaneum arginine
vasopressin receptor protein.
Length = 403
Score = 21.4 bits (43), Expect = 9.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 742 GGFLLDIVVREGTSIFQLLSS 804
GGFLL VV+ G ++ LSS
Sbjct: 108 GGFLLCKVVKYGQTLGPYLSS 128
>AM292369-1|CAL23181.1| 408|Tribolium castaneum gustatory receptor
candidate 48 protein.
Length = 408
Score = 21.4 bits (43), Expect = 9.8
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +2
Query: 296 HIHKNRSCTSSMYNCFLIKEVSLQ*IKPTCELRHCVKILFK 418
+I KN + C+ ++ V + + C L+H IL K
Sbjct: 41 NIRKNGLNYNFTKKCYFLRMVLIDLLIVGCILKHIFNILMK 81
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,658
Number of Sequences: 336
Number of extensions: 4164
Number of successful extensions: 28
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -