Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0017
         (477 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54052| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_52231| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   7.9  

>SB_54052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 469 SLKENKQLCPSRIKEGGHTYDIFVLFLCASTP 374
           SL++   LC + I+ GG T+ +    LCA++P
Sbjct: 27  SLRKENVLCDAVIQIGGKTHPVHKNVLCAASP 58


>SB_52231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 432

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 429 KKADTRTTSLCYFYAPPRLGIETRRQS 349
           KK+ TR+   CY + PP +G  T  QS
Sbjct: 255 KKSTTRSVFQCYVFGPPGVGKTTFLQS 281


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 475  SVSLKENKQLCPSRIKEGGHTYDIFVLFLCASTPRH 368
            S S+   +++C S+   GG   D++V+   A TPRH
Sbjct: 1021 SYSVYNRREVC-SQGMGGGWANDVYVILRRAGTPRH 1055


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,933,877
Number of Sequences: 59808
Number of extensions: 262235
Number of successful extensions: 499
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)