Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0017
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084154-3|AAK29869.1|  323|Caenorhabditis elegans Hypothetical ...    29   1.3  
Z82071-5|CAB04919.2|  514|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AY204180-1|AAO39184.1|  514|Caenorhabditis elegans nuclear recep...    27   9.2  
AL110478-13|CAC14397.1|  514|Caenorhabditis elegans Hypothetical...    27   9.2  

>AC084154-3|AAK29869.1|  323|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.6 protein.
          Length = 323

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 400 VLFLCASTPRH*DQKTISKMAAVAANCLLSESA 302
           +L L   T +H DQ T+SK+A + A C  + SA
Sbjct: 132 ILDLKLGTRQHGDQATVSKIACMTAKCQATTSA 164


>Z82071-5|CAB04919.2|  514|Caenorhabditis elegans Hypothetical
           protein W05B5.3a protein.
          Length = 514

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 218 CYRVKI*IVSANTECRCQVCRVK*TLKYGRFRE 316
           C R +  ++  N   RCQ CR+K  L  G  R+
Sbjct: 150 CTRAEDCLILRNNRNRCQCCRLKKCLAVGMSRD 182


>AY204180-1|AAO39184.1|  514|Caenorhabditis elegans nuclear receptor
           NHR-85 protein.
          Length = 514

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 218 CYRVKI*IVSANTECRCQVCRVK*TLKYGRFRE 316
           C R +  ++  N   RCQ CR+K  L  G  R+
Sbjct: 150 CTRAEDCLILRNNRNRCQCCRLKKCLAVGMSRD 182


>AL110478-13|CAC14397.1|  514|Caenorhabditis elegans Hypothetical
           protein W05B5.3a protein.
          Length = 514

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 218 CYRVKI*IVSANTECRCQVCRVK*TLKYGRFRE 316
           C R +  ++  N   RCQ CR+K  L  G  R+
Sbjct: 150 CTRAEDCLILRNNRNRCQCCRLKKCLAVGMSRD 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,477,500
Number of Sequences: 27780
Number of extensions: 201866
Number of successful extensions: 458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)