Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0010
         (539 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28427| Best HMM Match : fn3 (HMM E-Value=1.3e-07)                   29   2.4  
SB_43697| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_28427| Best HMM Match : fn3 (HMM E-Value=1.3e-07)
          Length = 276

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 75 NVCLRVNFYGMIFIFL 28
          N C+R++FYG  F+FL
Sbjct: 36 NACMRIDFYGCTFVFL 51


>SB_43697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 259 HNF*HNMHSSLRTRFDYFEKCNSTI 185
           H F H++ S + T F YF KC   I
Sbjct: 196 HGF-HDVRSGMLTNFQYFAKCTKEI 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,819,342
Number of Sequences: 59808
Number of extensions: 236291
Number of successful extensions: 374
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)